guix.git/gnu/packages/bioinformatics.scm, branch master
Personal branch of https://git.savannah.gnu.org/cgit/guix.git/ for implementing 'guix deploy'.
https://git.jakob.space/guix.git/atom?h=master
2019-06-21T09:41:54Z
gnu: khmer: Update to 3.0.0a3.
2019-06-21T09:41:54Z
Ricardo Wurmus
rekado@elephly.net
2019-06-21T09:39:25Z
urn:sha1:b556abe416a3e79b7f3b8cf491d8a3179c3d31c8
* gnu/packages/bioinformatics.scm (khmer): Update to 3.0.0a3.
[source]: Remove patch; remove seqan in snippet.
[inputs]: Add seqan-1.
* gnu/packages/patches/khmer-use-libraries.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
gnu: pigx-rnaseq: Update to 0.0.7.
2019-06-20T20:29:43Z
Ricardo Wurmus
rekado@elephly.net
2019-06-20T20:29:07Z
urn:sha1:28618b05f002720bc56bae76659717a0eba4dd8b
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
gnu: ngs-sdk: Update to 2.9.6.
2019-06-20T12:33:57Z
Ricardo Wurmus
rekado@elephly.net
2019-06-20T12:33:45Z
urn:sha1:30adfd36007884695d792eb78886d42e69266270
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
gnu: sra-tools: Update to 2.9.6.
2019-06-20T12:33:57Z
Ricardo Wurmus
rekado@elephly.net
2019-06-20T12:30:24Z
urn:sha1:20874b7044ec3ee28dc8302dc79e3623f6aae53b
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
gnu: ncbi-vdb: Update to 2.9.6.
2019-06-20T12:33:57Z
Ricardo Wurmus
rekado@elephly.net
2019-06-20T12:02:27Z
urn:sha1:7cb44fb5718c748a80e05a673f9b5faaa7586137
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
gnu: Add tbsp.
2019-06-17T18:22:38Z
Ricardo Wurmus
rekado@elephly.net
2019-06-17T12:39:29Z
urn:sha1:a6f2ced34b873612e6caca719ed448af3ee92b7e
* gnu/packages/bioinformatics.scm (tbsp): New variable.
gnu: r-seurat: Update to 3.0.2.
2019-06-17T02:55:03Z
Ricardo Wurmus
rekado@elephly.net
2019-06-17T02:55:03Z
urn:sha1:42df44f6454ff7a597493def6f57718b1b338c3d
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
gnu: r-tximport: Update to 1.12.1.
2019-06-17T02:54:56Z
Ricardo Wurmus
rekado@elephly.net
2019-06-17T02:54:56Z
urn:sha1:6dc3c5872893845935f958b260f063166dd2cae4
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
gnu: r-systempiper: Update to 1.18.1.
2019-06-17T02:54:51Z
Ricardo Wurmus
rekado@elephly.net
2019-06-17T02:54:51Z
urn:sha1:7bbd06ed597b0035aa0f12782e7af9b603253aaa
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
gnu: Remove r-loomr.
2019-06-14T15:32:04Z
Ricardo Wurmus
rekado@elephly.net
2019-06-14T15:26:27Z
urn:sha1:bc70516bbae8a6388f3ed19008d3e10efd1577a7
The loomR package is actually non-free software according to its author. See
https://github.com/mojaveazure/loomR/pull/24.
* gnu/packages/bioinformatics.scm (r-loomr): Remove variable.