guix.git/gnu/packages/bioinformatics.scm, branch wip-deploy Personal branch of https://git.savannah.gnu.org/cgit/guix.git/ for implementing 'guix deploy'. https://git.jakob.space/guix.git/atom?h=wip-deploy 2019-08-09T10:15:26Z gnu: freebayes: Simplify and enable tests. 2019-08-09T10:15:26Z Ricardo Wurmus rekado@elephly.net 2019-08-09T10:06:59Z urn:sha1:c2847323d8e1be6259c18a5026f5af9c9eec598b * gnu/packages/bioinformatics.scm (freebayes)[arguments]: Enable tests; set make flags; add phase "fix-tests"; fix both Makefiles in "fix-makefiles" phase; move build of tabixpp and vcflib to separate phase "build-tabixpp-and-vcflib"; simplify make invocations; remove custom "build" phase. gnu: freebayes: Move bamtools to inputs. 2019-08-09T10:15:26Z Ricardo Wurmus rekado@elephly.net 2019-08-09T10:03:14Z urn:sha1:7cd98e868ed00898cff5ac3749194b2b42fc02bb * gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Move bamtools from here... [inputs]: ...to here. gnu: Add freebayes. 2019-08-09T07:47:25Z Pierre Neidhardt mail@ambrevar.xyz 2019-05-18T17:26:40Z urn:sha1:8803dbdad80aaf5a67ace81e3b6a336efee3c60d * gnu/packages/bioinformatics.scm (freebayes): New variable. gnu: Add vcflib. 2019-08-09T07:43:40Z Pierre Neidhardt mail@ambrevar.xyz 2019-05-18T17:26:39Z urn:sha1:95fb1a185106d1a5dcfb035ba62c28e0fd9fb80a * gnu/packages/bioinformatics.scm (vcflib): New variable. (tabixpp-freebayes): New private variable. gnu: r-hdf5array: Update to 1.12.2. 2019-08-08T14:47:05Z Ricardo Wurmus rekado@elephly.net 2019-08-08T14:35:07Z urn:sha1:90060e2071cf3c21430d6470d15324c502bccc4c * gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2. gnu: r-biocparallel: Update to 1.18.1. 2019-08-08T14:47:02Z Ricardo Wurmus rekado@elephly.net 2019-08-08T14:35:00Z urn:sha1:a39f2e4cea3954497b541eba71e24627ce111b15 * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1. Revert "gnu: Add vcflib." 2019-08-08T12:34:05Z Efraim Flashner efraim@flashner.co.il 2019-08-08T12:33:37Z urn:sha1:1a069a170c636751695d54c2b282a196eda773c6 This reverts commit 194e45f90addf5f9bd3e7e2de1dd50b3071f053b. This commit does not have a good commit message, and it breaks master Revert "gnu: Add freebayes." 2019-08-08T12:32:51Z Efraim Flashner efraim@flashner.co.il 2019-08-08T12:32:39Z urn:sha1:6bc63fd8a7a44a3b2bd1686be619237e7dd94ef1 This reverts commit 173e046950e153477a6aaa0f4860d8f080df6843. gnu: Add freebayes. 2019-08-08T12:18:34Z Pierre Neidhardt mail@ambrevar.xyz 2019-05-18T17:26:40Z urn:sha1:173e046950e153477a6aaa0f4860d8f080df6843 * gnu/packages/bioinformatics.scm (freebayes): New variable. gnu: Add vcflib. 2019-08-08T12:18:33Z Pierre Neidhardt mail@ambrevar.xyz 2019-05-18T17:26:39Z urn:sha1:194e45f90addf5f9bd3e7e2de1dd50b3071f053b * gnu/packages/bioinformatics.scm (vcflib): New variable.